Microarray Data Analysis

Table of Contents

Chapter 1
Microarray Data Analysis: An Overview of Design, Methodology and Analysis
Ashani T. Weeraratna and Dennis D. Taub

Chapter 2
Genomic Signal Processing: From Matrix Algebra to Genetic Networks
Orly Alter

Chapter 3
Online Analysis of Microarray Data Using Artificial Neural Networks
Braden Greer and Javed Khan

Chapter 4
Signal Processing and the Design of Microarray Time Series Experiments
Robert R. Klevecz, Caroline M. Li and James L. Bolen

Chapter 5
Predictive Models of Gene Regulation: Application of Regression Methods to Microarray Data
Debopriya Das and Michael Q. Zhang

Chapter 6
Statistical Framework for Gene Expression Data Analysis
Olga Modlich and Marc Munnes

Chapter 7
Gene Expression Profiles and Prognostic Markers for Primary Breast Cancer
Yixin Wang, Jan Kljin, Yi Zhang, David Atkins and John Foekens

Chapter 8
Comparing microarray studies
Mayte Suárez-Fariñas and Marcelo O. Magnasco

Chapter 9
A Pitfall in Series of Microarrays: The Position of Probes Affects the Cross Correlation of Gene Expression Profiles
Gábor Balázsi and Zoltán N. Oltvai

Chapter 10
In Depth Query of Large Genomes using Tiling Arrays
Manoj Pratim Samanta, Waraporn Tongprasit and Viktor Stolc


Chapter 11
Analysis of Comparative Genomic Hybridization Data on cDNA Microarrays
Sven Bilke and Javed Khan

Chapter 12
Integrated high-resolution genome-wide analysis of gene dosage and gene expression in human brain tumors
Dejan Juric, Claudia Bredel, Branimir I. Sikic, and Markus Bredel

Chapter 13
Progression-Associated Genes in Astrocytoma Identified by Novel Microarray Gene Expression Data Reanalysis
Tobey J. MacDonald, Ian F. Pollack, Hideho Okada, Soumyaroop Bhattacharya, and JamesLyons-Weiler

Chapter 14
Interpreting Microarray Results with Gene Ontology and MeSH Ontology
John D. Osborne, Lihua (Julie) Zhu, Simon M. Lin, and Warren A. Kibbe

Chapter 15
Incorporation of Gene Ontology Annotations